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Cloning Systems Citations

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CloneSmart® Cloning Kits

Robinson, M., Li, B., Ge, Y., Ko, D., Yendluri, S., Harding, T., VanRoey, M., Spindler, K. R., and Jooss, K. (2009). Novel Immunocompetent Murine Tumor Model for Evaluation of Conditionally Replication-Competent (Oncolytic) Murine Adenoviral Vectors. J. Virol. 83, 3450.

Wu, C., Kim, Y., Smith, K. M., Li, W., Hood, H. M, Staben, C., Selker, E. U., Sachs, M. S., and. Farman M. L, (2009). Characterization of Chromosome Ends in the Filamentous Fungus Neurospora crassa, Genetics, 181, 1129.

Helm R., A.,, Barnhart M., M., and Seifert S. H. (2007). pilQ Missense Mutations Have Diverse Effects on PilQ Multimer Formation, Piliation, and Pilus Function in Neisseria gonorrhoeae. J. Bacteriol. 189 (8): 3198.

Felnagle, E. A., Rondon, M. R., Berti, A. D., Crosby, H. A., and Thomas M. G. Envir. (2007). Identification of the Biosynthetic Gene Cluster and an Additional Gene for Resistance to the Antituberculosis Drug Capreomycin. Microbiol, 73 (13), 4162.

Zheng, H., Zhong, Z., Lai, X., Chen, W., Li S., and Zhu J. (2006). A LuxR/LuxI-Type Quorum-Sensing System in a Plant Bacterium, Mesorhizobium tianshanense, Controls Symbiotic Nodulation. J. Bacteriol, 188 (5), 1943.

Charrier, C., Duncan, G. J., Reid, M. D., Rucklidge, G. J., Henderson, D., Young, P., Russell, V. J., Aminov, R. I., Flint, H. J., and Louis P. (2006). A Novel Class of CoA-transferase Involved in Short-Chain Fatty Acid Metabolism in Butyrate-Producing Human Colonic Bacteria. Microbiol, 152 (1), 179.

Xie, Y., Yao, Y., Kolisnychenko, V., Teng, C., and Kim K. (2006). HbiF Regulates Type 1 Fimbriation Independently of FimB and FimE. Infect. Immun,74 (7), 4039.

Zufall, R. A., McGrath, C. L., Muse, S. V., and Katz L. A. (2006). Genome Architecture Drives Protein Evolution in Ciliates. Mol. Biol. Evol, 23 (9), 1681.

Bulach, D. M. , Zuerner, R. L., Wilson, P., Seemann, T., McGrath, A., Cullen, P. A., Davis, J., Johnson, M., Kuczek, E., Alt, D. P., Peterson-Burch, B., Coppel, R. L., Rood, J. I., Davies, J. K., and Adler, B. (2006). Genome Reduction in Leptospira borgpetersenii Reflects Limited Transmission Potential. PNAS, 103 (39), 14560.

Simons, K. J., Fellers, J. P., Trick, H. N, Zhang, Z., Tai, Y., Gill, B. S., and Faris J. D. (2006). Molecular Characterization of the Major Wheat Domestication Gene Q. Genetics, 172 (1), 547.

Van der Werf, M. J., Pieterse, B., Van Luijk, N., Schuren, F., Van der Werff-van der Vat, B., Overkamp, K., and Jellema, R. H. (2006). Multivariate Analysis of Microarray Data by Principal Component Discriminant Analysis: Prioritizing Relevant Transcripts Linked to the Degradation of Different Carbohydrates in Pseudomonas putida S12. Microbio, 152 (1), 257.

Rehmeyer, C., Li, W., Kusaba, M., Kim, Y., Brown, D., Staben, C., Dean, R., and Farman, M. (2006). Organization of Chromosome Ends in the Rice Blast Fungus, Magnaporthe oryzae. Nucleic Acids Res, 34 (17), 4685.

Duffy, S. P., Young, A. M., Morin, B., Lucarotti, C. J., Koop, B. F., and Levin, D. B., (2006). Sequence Analysis and Organization of the Neodiprion abietis Nucleopolyhedrovirus Genome. J. Virol, 80 (14), 6952.

Baldridge, G. D., Burkhardt, N., Herron, M. J., Kurtti, T. J., and Munderloh, U. G. (2005). Analysis of Fluorescent Protein Expression in Transformants of Rickettsia monacensis, an Obligate Intracellular Tick Symbiont. Appl. Envir. Microbiol, 71 (4), 2095.

Paul, J. H., Williamson, S. J., Long, A., Authement, R. N., John, D., Segall, A. M., Rohwer, F. L., Androlewicz, M., and Patterson, S. (2005). Complete Genome Sequence of FHSIC, a Pseudotemperate Marine Phage of Listonella pelagia. Appl. Envir. Microbio, 71 (6), 3311.

Steane, D. A. (2005). Complete Nucleotide Sequence of the Chloroplast Genome from the Tasmanian Blue Gum, Eucalyptus globulus (Myrtaceae). DNA Res, 12 (3), 215.

Hall, S.E., Luo, S., Hall, A. E., and Preuss, D. (2005). Differential Rates of Local and Global Homogenization in Centromere Satellites from Arabidopsis Relatives. Genetics, 170 (4), 1913.

Lohr, J.E., Chen, F., and Hill, R.T. (2005). Genomic Analysis of Bacteriophage JL001: Insights into Its Interaction with a Sponge-Associated Alpha-Proteobacterium. Appl. Envir. Microbiol, 71 (3), 1598.

Dziejman, M., Serruto, D., Tam, V. C., Sturtevant, D., Diraphat, P., Faruque, S. M., Rahman, M. H., Heidelberg, J. F., Decker, J., Li, L., Montgomery, K. T., Grills, G., Kucherlapati, R., and Mekalanos, J. J. (2005). Genomic characterization of non-O1, non-O139 Vibrio cholerae Reveals Genes for a Type III Secretion System. PNAS, 102 (9), 3465.

Sperry, S. M., Kazi, L., Graham, R. L., Baric, R. S., Weiss, S. R., and. Denison, M. R. (2005). Single-Amino-Acid Substitutions in Open Reading Frame (ORF) 1b-nsp14 and ORF 2a Proteins of the Coronavirus Mouse Hepatitis Virus Are Attenuating in Mice. J. Virol, 79 (6), 3391.

Barbier, G., Oesterhelt, C., Larson, M. D., Halgren, R. G., Wilkerson, C., Garavito, R. M., Benning, C., and Weber, A. P.M. (2005). Comparative Genomics of Two Closely Related Unicellular Thermo-Acidophilic Red Algae, Galdieria sulphuraria and Cyanidioschyzon merolae, Reveals the Molecular Basis of the Metabolic Flexibility of Galdieria sulphuraria and Significant Differences in Carbohydrate Metabolism of Both Algae. Plant Physiology, 137 (2), 460.

Fouchier, R. A. M., Hartwig, N. G., Bestebroer, T. M., Niemeyer, B., De Jong, J. C., Simon, J. H., and Osterhaus, A. D. M. E. (2004). A Previously Undescribed Coronavirus Associated with Respiratory Disease in Humans. PNAS, 101 (16), 6212.

Tucker, A. M., Winkler, H. H., Driskell, L. O., and Wood, D. O. (2003). S-Adenosylmethionine Transport in Rickettsia prowazekii. J. Bacteriol, 185 (10), 3031.

Thomas, M. G., Chan, Y. A., and Ozanick, S. G. (2003). Deciphering Tuberactinomycin Biosynthesis: Isolation, Sequencing, and Annotation of the Viomycin Biosynthetic Gene Cluster. Antimicrob. Agents Chemother, 47 (9), 2823.

Breitbart, M., Hewson, I., Felts, B., Mahaffy, J. M., Nulton, J., Salamon, P., and Rohwer, F. (2003). Metagenomic Analyses of an Uncultured Viral Community from Human Feces. J. Bacteriol, 185 (20), 6220.

Yount, B., Curtis, K. M., Fritz, E. A., Hensley, L. E., Jahrling, P. B., Prentice, E., Denison, M. R., Geisbert, T. W., and. Baric, R. S. (2003). Reverse Genetics with a Full-Length Infectious cDNA of Severe Acute Respiratory Syndrome Coronavirus. PNAS, 100 (22), 12995.

Yount, B., Denison, M. R., Weiss, S. R., and. Baric, R. S. (2002). Systematic Assembly of a Full-Length Infectious cDNA of Mouse Hepatitis Virus Strain A59. J. Virol, 76 (21), 11065.

Competent Cells for Cloning Citations

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E. cloni® 10G Competent Cells

Downes, J., Vartoukian, S. R., Dewhirst, F. E, Izard, J., Chen, T., Yu, W., Sutcliffe, I. C., and Wade, W. G. (2009). Pyramidobacter piscolens gen. nov., sp. nov., a Member of the Phylum ‘Synergistetes’ Isolated from the Human Oral Cavity. Int J Syst Evol Microbiol. 59, 972.

Bertossa, R. C., Zande, L., and Beukeboom, L. W. (2009). The Fruitless Gene in Nasonia Displays Complex Sex-Specific Splicing and Contains New Zinc Finger Domains. Mol. Biol. Evol. 26, 1557.

Baldridge, G. D., Burkhardt, N. Y, Felsheim, R. F., Kurtti, T. J., and Munderloh, U. G. (2007). Transposon Insertion Reveals pRM, a Plasmid of Rickettsia monacensis. Appl. Envir. Microbiol, 73 (15), 4984.

O'Neill, A. J., Larsen, A. R., Skov, R., Henriksen, A. S., and Chopra, I. (2007). Characterization of the Epidemic European Fusidic Acid-Resistant Impetigo Clone of Staphylococcus aureus. J. Clin. Microbiol, 45 (5), 1505.

Bidlingmaier, S. and Liu, B. (2006). Construction and Application of a Yeast Surface-displayed Human cDNA Library to Identify Post-translational Modification-dependent Protein-Protein Interactions. Mol. Cell. Proteomics, 5 (3), 533.

Samuelson, J. C., Morgan, R. D., Benner, J. S., Claus, T. E., Packard, S. L., and Xu, S. (2006) Engineering a Rare-cutting Restriction Enzyme: Genetic Screening and Selection of NotI Variants. Nucleic Acids Res, 34 (3), 796.

Marinescu, V. D., Kohane, I. S., Kim, T., Harmin, D. A., Greenberg, M. E., and Riva, A. (2006). START: an Automated Tool for Serial Snalysis of Chromatin Occupancy Data. Bioinformatics, 22 (8), 999.

Tengs, T., LaFramboise, T., Den, R.B., Hayes, D. N., Zhang, J., DebRoy, S., Gentleman, R. C., O'Neill, K., Birren, B., and Meyerson, M. (2004) Genomic Representations using Concatenates of Type IIB Restriction Endonuclease Digestion Fragments. Nucleic Acids Res, 32 (15), e121.

End Repair Systems Citations

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DNATerminator® Kit

Paauw, A., Caspers, M. P. M., Leverstein-van Hall, M., Schuren, F. H. J, Montijn, R. C., Verhoef, J., and Fluit, A. C. (2009). Identification of Resistance and Virulence Factors in an Epidemic Enterobacter hormaechei Outbreak Strain. Microbiol. 155,1478

Govind, R., Fralick, J. A., and Rolfe, R. D. (2006). Genomic Organization and Molecular Characterization of Clostridium difficile Bacteriophage CD119. J. Bacteriol, 188 (7), 2568.

Dellaporta, S. L., Xu, A., Sagasser, S., Jakob, W., Moreno, M. A., Buss, L. W., and Schierwater, B. (2006). Mitochondrial Genome of Trichoplax adhaerens Supports Placozoa as the Basal Lower Metazoan Phylum. PNAS, 103 (23), 8751.

Roybal, C. N., Marmorstein, L. Y, Vander Jagt, D. L., and Abcouwer, S. F. (2005). Aberrant Accumulation of Fibulin-3 in the Endoplasmic Reticulum Leads to Activation of the Unfolded Protein Response and VEGF Expression. Invest. Ophthalmol. Vis. Sci., 46 (11), 3973.

Vermeulen, N., Pavlovic, M., Ehrmann, M. A., Gänzle, M. G., and Vogel, R. F. (2005). Functional Characterization of the Proteolytic System of Lactobacillus sanfranciscensis DSM 20451T during Growth in Sourdough. Appl. Envir. Microbiol, 71 (10), 6260.

PCR Terminator® Kit

Roybal, C. N., Hunsaker, L. A., Barbash, O., Vander Jagt, D. L., and Abcouwer, S. F. (2005). The Oxidative Stressor Arsenite Activates Vascular Endothelial Growth Factor mRNA Transcription by an ATF4-dependent Mechanism. J. Biol. Chem, 280 (21), 20331.

Competent Cells for Protein Expression Citations

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OverExpress™

C41(DE3) and C43(DE3) Competent Cells Akhtar, P., Anand, S. P., Watkins, S. C., and. Khan, S. A. (2009). The Tubulin-Like RepX Protein Encoded by the pXO1 Plasmid Forms Polymers in vivo in Bacillus anthracis. J. Bacteriol, 191, 2493

Ray, D., Kazan, H., Chan, E.T., Pena Castillo, L., Chaudhry, S. Talukder, S., Blencowe, B.J., Morris, Q., and Hughes, T.R. (2009). Rapid and Systematic Analysis of the RNA Recognition Specificities of RNA-binding Proteins. Nature Biotechnology, 27:7.

Siponen, M., Spinelli, S., Blangy, S., Moineau, S., Cambillau, C., and Campanacci, V. (2009). Crystal Structure of a Chimeric Receptor Binding Protein Constructed from Two Lactococcal Phages. J. Bacteriol. 191:3220.

Glenn, K.A., Nelson, R.F., Wen, H.M., Mallinger, A.J., and Paulson, H.L. (2008). Diversity in Tissue Expression, Substrate Binding, and SCF Complex Formation for a Lectin Family of Ubiquitin Ligases. J. Biol. Chem. 283, 12717.

Prisic, S., and Peters, R. J. (2007). Synergistic Substrate Inhibition of ent-Copalyl Diphosphate Synthase: A Potential Feed-Forward Inhibition Mechanism Limiting Gibberellin Metabolism. Plant Physiol. 144, 445.

E. cloni® Express Competent Cells

Opperman, D.J., Piater, L.A., and van Heerden, E. (2008). A Novel Chromate Reductase from Thermus scotoductus SA-01 Related to Old Yellow Enzyme. J. Bacteriol. 190, 3076.

Langston, L. D., and O'Donnell, M., (2008). DNA Polymerase Is Highly Processive with Proliferating Cell Nuclear Antigen and Undergoes Collision Release upon Completing DNA. J. Biol. Chem., 283, 29522.

Amplification Enzyme Citations

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EconoTaq® DNA Polymerase

Balakrishnan, C. N., and Edwards, S. V. (2009). Nucleotide Variation, Linkage Disequilibrium and Founder-Facilitated Speciation in Wild Populations of the Zebra Finch (Taeniopygia guttata). Genetics, 2, 645

Zalapa, J. E., Brunet, J., and Guries, R. P. (2009) Patterns of Hybridization and Introgression Between Invasive Ulmus pumila (Ulmaceae) and native U. rubra. Am. J. Botany. 96, 1116

Kan, R., Sun, X., Kolas, N.K., Avdievich, E., Kneitz, B., Edelmann, W., and Cohen, P.E. (2008). Comparative Analysis of Meiotic Progression in Female Mice Bearing Mutations in Genes of the DNA Mismatch Repair Pathway. Biol Reprod. 78, 462.

Alter, S. E., Ramirez, S. F., Nigenda, S., Ramirez, J. U., Bracho, L. R., and Palumbi, S. R. (2009). Mitochondrial and Nuclear Genetic Variation across Calving Lagoons in Eastern North Pacific Gray Whales (Eschrichtius robustus). J. Hered. 100, 34.

EconoTaq® PLUS & PLUS GREEN 2X Master Mixes

Qu, F., Ye, X., and Morris, T. J. (2008). Arabidopsis DRB4, AGO1, AGO7, and RDR6 Participate in a DCL4-initiated Antiviral RNA Silencing Pathway Negatively Regulated by DCL1. PNAS. 105, 14732.

Chan, C.-H., Mitchison, H. M., and Pearce, D. A. (2008). Transcript and in silico Analysis of CLN3 in Juvenile Neuronal Ceroid Lipofuscinosis and Associated Mouse Models. Hum. Mol. Genet., 17, 3332.

Libraries created with Lucigen products or by Lucigen scientists

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Sharakhov, I. V., White, B. J., Sharakhova, M. V., Kayondo, J., Lobo, N. F., Santolamazza, F., Torre, A., Simard, F., Collins, F. H., and Besansky, N. J. (2006). Breakpoint Structure Reveals the Unique Origin of an Interspecific Chromosomal Inversion (2La) in the Anopheles gambiae Complex. PNAS, 103 (16), 6258.

Aziz, R. K., Edwards, R. A., Taylor, W. W., Low, D. E., McGeer, A., and Kotb, M. (2005). Mosaic Prophages with Horizontally Acquired Genes Account for the Emergence and Diversification of the Globally Disseminated M1T1 Clone of Streptococcus pyogenes. J. Bacteriol. 187 (10), 3311.

Rice, G., Tang, L., Stedman, K., Roberto, F., Spuhler, J., Gillitzer, E., Johnson, J. E., Douglas, T., and Young, M.( 2004). The Structure of a Thermophilic Archaeal Virus Shows a Double-stranded DNA Viral Capsid Type that Spans all Domains of Life. PNAS, 101 (20), 7716.

Lindell, D., Sullivan, M. B., Johnson, Z. I., Tolonen, A. C, Rohwer, F., and Chisholm, S. W. (2004). Transfer of Photosynthesis Genes to and from Prochlorococcus Viruses. PNAS, 101 (30), 11013.

Seguritan, V., Feng, I., Rohwer, F., Swift, M., and. Segall, A. M. (2003). Genome Sequences of Two Closely Related Vibrio parahaemolyticus Phages, VP16T and VP16C. J. Bacteriol, 185 (21), 6434.

Breitbart, M., Salamon, P., Andresen, B. Mahaffy, J.M., Segall, A.M., Mead, D., Azam, F. and Rohwer, F. (2002). Genomic Analysis of Uncultured Marine Viral Communities. PNAS, 99 (22), 14250.